Error While Drawing Animation Of Seaborn Heatmap For 3d Volume

Trying to visualize the cross-correlation between two volumes, img_3D, and mask_3D, using Seaborn heatmap, and animation from Matplotlib to visualize the 3D cross-correlation resul

Solution 1:

Check this code:

import numpy as np
np.random.seed(0)
import matplotlib.pyplot as plt
from matplotlib.animation import FuncAnimation
from scipy.signal import correlate
import seaborn as sns
sns.set()

img = np.load('img.npy')
act = np.load('act.npy')

result = correlate(img, act, mode = 'same')

defupdatefig(sl):
    ax.cla()
    print(sl + 1, ' / ', result.shape[2])
    sns.heatmap(result[..., sl], cbar = False)
    ax.set_title("frame {}".format(sl + 1))
    ax.axis('off')

fig, ax = plt.subplots()
ani = FuncAnimation(fig, updatefig, frames = result.shape[2], interval = 5)

plt.show()

which gives me this animation (I halved the animation reported below to reduce the file size under 2 MB, the code above reproduce all 40 frames):

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EDIT

In order to add a fixed colorbar to the heatmap, check this code:

import numpy as np
np.random.seed(0)
import matplotlib.pyplot as plt
from matplotlib.animation import FuncAnimation
from scipy.signal import correlate
import seaborn as sns
sns.set()

img = np.load('img.npy')
act = np.load('act.npy')

result = correlate(img, act, mode = 'same')

defupdatefig(sl):
    ax.cla()
    print(sl + 1, ' / ', result.shape[2])
    sns.heatmap(result[..., sl],
                ax = ax,
                cbar = True,
                cbar_ax = cbar_ax,
                vmin = result.min(),
                vmax = result.max())
    ax.set_title("frame {}".format(sl + 1))
    ax.axis('off')

grid_kws = {'width_ratios': (0.9, 0.05), 'wspace': 0.2}
fig, (ax, cbar_ax) = plt.subplots(1, 2, gridspec_kw = grid_kws, figsize = (10, 8))
ani = FuncAnimation(fig, updatefig, frames = result.shape[2], interval = 5)

plt.show()

which produces this animation (cut as the previous one):