Getting Started with Python

Using a typical pdb file, I am able to calculate the distance between two atoms in a structure usin… Read more Biopython Pdb: Calculate Distance Between An Atom And A Point

I have a list of ~1 million unique 16-character strings (an array called VEC) and I want to calcula… Read more Looking For Fast Way To Compute Pair Wise Distances Of Many Strings

Given the following code that computes distances between vectors in list 'vect’: import numpy a… Read more How To Avoid Quadratic Computation Resulting From Double 'for Loop' When Computing Distances Between Vectors

I have two vectors of points, x and y, shaped (n, p) and (m, p) respectively. As an example: x = np… Read more Compute Matrix Of Pairwise Angles Between Two Arrays Of Points

I am trying to calculate the distance between one point and many others on a WGS84 ellipsoid - not … Read more Distance Betweeen Coordinates Python Vs R Computation Time

Given the following code that computes distances between vectors in list 'vect’: import numpy a… Read more How To Avoid Quadratic Computation Resulting From Double 'for Loop' When Computing Distances Between Vectors