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Showing posts with the label Bioinformatics

What Causes Python Error 'bad Escape \c'?

I just wrote a function that will look at a text file and count all of the instances of True and Fa… Read more What Causes Python Error 'bad Escape \c'?

Optimization Of An All-paths Algorithm

I've been successful using the following algorithm to complete all-path data up to path length … Read more Optimization Of An All-paths Algorithm

Using Regex To Search Until Desired Pattern

I am using the following regex: orfre = '^(?:...)*?((ATG)(...){%d,}?(?=(TAG|TAA|TGA)))' % (… Read more Using Regex To Search Until Desired Pattern

Trouble With Stacked Bar Graph Without Pooling

I have a clear idea of what I would like to plot, but I am not sure where to start using matplotlib… Read more Trouble With Stacked Bar Graph Without Pooling

How To Convert A Set Of DNA Sequences Into Protein Sequences Using Python Programming?

I am using python to create a program that converts a set of DNA sequences into amino acid (protein… Read more How To Convert A Set Of DNA Sequences Into Protein Sequences Using Python Programming?

Using The Reserved Word "class" As Field Name In Django And Django REST Framework

Description of the problem Taxonomy is the science of defining and naming groups of biological orga… Read more Using The Reserved Word "class" As Field Name In Django And Django REST Framework

Snakemake - Dynamically Derive The Targets From Input Files

I have a large number of input files organized like this: data/ ├── set1/ │ ├── file1_R1.fq.gz │ … Read more Snakemake - Dynamically Derive The Targets From Input Files

Python: Multiple Consensus Sequences

starting from a list of dna sequences, I must have in return all the possible consensus (the result… Read more Python: Multiple Consensus Sequences